rs27188057 SNP Detail

Summary

• ID
  rs27188057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142440785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAACCCC CAACACCTCA
  CACACACACA TGCGTTAGCT GTGGAGTGAT GGTGATTGAA AGCGTTAATT ATCAAAATTG
  TGTCATCAAT TCTAATGTGT GCACACACAC ACACACATGA GGGTGTGAGC ACAGACACAC
  ATATATTATT ATTTTTAAAG TTATGCCTTC ATACAGCTGA AAAGGGAAAA CAAATAAATC
  R
  GGAAGCTACA GTGAGCCAGG CGTCTGTGTT CATACCTAAG GCTTTAATAC TTATTGTGAG
  TCAACAGGGC ACAGGCACTG GCTCCAGGTA CTCTGTTTAC TTGCAGACAT GACCCTCCCT
  CCCACCCCTT TTCTTTTAGC TCAGAGAATA GAGTACTTGT CAGTAAATAC AGGCTACATG
  CAAATTAAAG TTTTGGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37429479	NES08942977	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27188057					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37429479	NES08942977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142440785 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	247 bp proximal