rs27188050 SNP Detail

Summary

• ID
  rs27188050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142442050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCTATGT ATTAATATAG CCCACAATAC ATTAGTTGAA
  GAGTCAAGGA TCCAGGTGTG ACTGTAGGAA CGACGGAGTG AAAACACAGA TCTGTTACCA
  Y
  CATTGTCTTT GCTCTAATTC TCTTGACCTT AAAATGCCAC TATTGCTTGT GCAGTGAGTT
  CATCTGAAAT TTTATATTTT AGGATAAAAC AATATTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37429472	NES08942985	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	C	T	C	C	T	C	T	T
ss45230425	mCV23135100	ABI	CRAMUS_MOUSE	f	SNP		T	T				T		C
ss147736808	ENSMUSSNP6375966	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27188050					SNP	T	T	T	T	T	T	T	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37429472	NES08942985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142442050 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	325 bp distal