rs27186036 SNP Detail

Summary

• ID
  rs27186036
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30922868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACTTGG ATGCTCTGAA
  GCCCAGGCTA GCCTGAAACT CACTTGGCTA CTCCTGGCTC CGCCTCCTGA GAGCTGGGAT
  TATAGGCACG AGCCACCACC ATACATCATA TTTTAAATTT ACACATTTTG TTGAATGGAA
  TGGAAACGCC GATCAGATTT CAAACGACAC AGATGTAAGC TAGCCGGTGG CAGTTCTGTA
  S
  ACAGCCAAGT TGGACAAGCG AACCCAGGCA CAAGATGCCC CCAGTTCCCC GAGTGTCTGA
  GTCGCTTGCT CTCTGCTGAC CTCTTGAAGG CCTGTAACAG CCACAGTGGT GGGGAGAGAC
  AACTCCAATG CTTTTTGTTT TGTTTTAAGT GGATTAAATA TAAGTCTTAG CACCTTTGGC
  GTTTTTGTCT AAATAGACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403555	NES08751300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27186036					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403555	NES08751300	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30922868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr23418	transcription start site region 23418			1196 bp upstream
Tssr23419	transcription start site region 23419			1077 bp upstream
Tssr23420	transcription start site region 23420			994 bp upstream