rs27176702 SNP Detail

Summary

• ID
  rs27176702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30489787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACTAT GCCCAGCCTC
  CATCTTACTT TTTGAGAGAG GGTCTCTCAT TGAACCTGCA GCCACTAACC AGCTGGCCAG
  GCTGGCCAGC CATCTCTAGG TATCCTCCTG CCTCAGCTTC CCAGAGCTGA GATCATAGCT
  GTGTACACTG CCATGCTTGG GTTTTCCCCT GAACACACGT GCAGTAGACT CTTGGCTGGT
  Y
  TTCTCTTCCT TGGATTCTGT CCAGCTGTGC TCTGCCTCTA GCAGCCCCAA GGTAGGCTCA
  TCCTCATCTG GGAGGAGTCA AGGGCTGAGT TACCGTCCCC CACTCCCCCC ACCCCTGCAC
  CCTCTCTCAG CTTAGCTCCT CCTAGAGGAG GCTCAGACAC AGTTGCTACC ATGCTAAAAA
  ACAAAACAAG CACAACCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404521	NES08759974	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176702					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404521	NES08759974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30489787 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
Rr554365	regulatory region 554365	within coordinates
Rr554366	regulatory region 554366	526 bp proximal