rs27152695 SNP Detail

Summary

• ID
  rs27152695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35567989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCTATGCC GCTGCTGGCC CTTGTGCTGG TAGCCCACAG
  AGAGCATGTG CTGAAGTTCC CTGCCTCTAA AGGCAGACTC TTCAGCCGCC CTGGCAACAG
  Y
  TCCACGCCAG CCTGTGGTGT GGCCACTGAG CGTGCCTCCT GACTGGCTGC TTTCTCTAGC
  TTCTCAGCAG CCGCCTCTTT CAGGTTTCAG GCAAATGGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37391816	NES08749502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27152695					SNP	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391816	NES08749502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35567989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr373039	regulatory region 373039			985 bp upstream
Rr555756	regulatory region 555756			1308 bp distal
Rr555757	regulatory region 555757			within coordinates
Rr555758	regulatory region 555758			1799 bp proximal