rs27152692 SNP Detail

Summary

• ID
  rs27152692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35568580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGCCTC TAGAGAGGAA
  TAGATGAGAT TTACAGCAGG GTGCAGGCTG TTGAGACCAG AAGGACACTA TCATGTTGTG
  TTCCCCTCCC TTGTGTCCCT TTTATCCAGA TGCCTTCTGC TCTACCCATC GTTCAAATCC
  CCGACCCTTT TACTTAGAGC TTGCTTCCAT GATGCCCCTT GCCCAGCCTC TTTAGCTCTT
  Y
  ATTTGAGTCC TCATTGGATC TGCTCCTCAA CAGCAGGGCT TCCTCAGGAC ACTGTGGGAG
  TGCAGCCAGC CCTACAGAAG GCCCTCTGCC CCAGTCTGGA TAGCTGAGTT ATAGGCTGTA
  GAGATTAGCC CCACCGAGAG GAGCTGGGGG TGGGGGGCAA GTGAGGAAGG GATGTGCTCA
  GTGGGCTAGA GCACCTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37391813	NES08749505	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27152692					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391813	NES08749505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35568580 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr373039	regulatory region 373039			394 bp upstream
Rr555756	regulatory region 555756			1899 bp distal
Rr555757	regulatory region 555757			within coordinates
Rr555758	regulatory region 555758			1208 bp proximal
Tssr17486	transcription start site region 17486			1999 bp upstream