rs27152684 SNP Detail

Summary

• ID
  rs27152684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35570517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCTGGA CACTCCAAAG
  GCCTAGCCTT TAAACAAAGG TCATACAGTG AATGATCTCA GAGACCTACA CACAGGCTGA
  ACGTTACCAA CTCATATGTC CTGCTGTCAG AGTACCCACC TGTGGGAGGG GCCTAGGATC
  GAAGTGAATC AGTTTGTACT GGCTGGGGGC AGGGCTTTGC AAGGAAGCAG TGTTGCAATC
  R
  GGATATCCTG GGCGGGTAAA GCTGGGGCTG ACCTTATTTA TCTGCCGTTT TAGTCTTTAT
  CCACACACAT TGGCAGGTCT TTGCTGTGTG TCAGAACCCA CTGTGACCCT AGGAGAGGGT
  TGGTATGTTG TGGGCCCTGC TTTGCCCATG TGACATAGGA ACCCTAGCTG AGGCGCTTCA
  CAGCTGTGGT GACAATTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37391805	NES08749482	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27152684					SNP	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391805	NES08749482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35570517 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr373039	regulatory region 373039			within coordinates
Rr555757	regulatory region 555757			1653 bp distal
Rr555758	regulatory region 555758			within coordinates
Tssr17486	transcription start site region 17486			62 bp upstream