rs27152678 SNP Detail

Summary

• ID
  rs27152678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35571781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATTATT CCTATAGTGT
  ATGCGAAGCC TTAGGGCTAG AGTCAGAGGC AGCTGACCCT CAAGGCATCA GACTACAGAC
  TATAAGTCAT CAACAAATTC CCTTACTATA TAGAGACTAC CCATAAGTTC TGTGACTGCA
  GAGAACCCTG ACTAATACAT TGGTGGAACC CCTACAGCCA GGTTTTCATC CTCAGTGTGC
  R
  GAAGCAGGAG GAGAATGGAG AGCACCCCAC CACTGCCCCT GTATGGCCTT GAAGGGTCTA
  CTACTCCCAA ATGCCTGTAT CTGAGGTGGG GCTCCTGAGT GTTTCCCAGC CCTGCCTTCT
  GGGTGCTGAC CTGAGTCAGG CAGAGGTCAG GGGTGATGAG AGCCATATTA GCCAGCTCTT
  AATCAGAGCA CTCATCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37391799	NES08749467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27152678					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391799	NES08749467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35571781 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr373039	regulatory region 373039			15 bp downstream
Rr555758	regulatory region 555758			341 bp distal
Tssr17486	transcription start site region 17486			1197 bp downstream