rs27152677 SNP Detail

Summary

• ID
  rs27152677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35572426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCACAG CAGCTGGGCT
  GGGGACGTTC TCTAGGTATT CTAGTCCGTC CAGGAGTGGC GGGGGTTCTG GAGCATGGCT
  TTGGAGCAGT TTCACAGAGT CCAAGGCAGG CAGGTTGCCT GTTTCATTCA CTGGTGCAGA
  CAGAACTCCC TCAAGGGATC CTTAGGATTG AATTATTTCT GTTTTGTTCA CCTGTGCTGT
  R
  CCCTGGGGAC AAGGACAGAA ATCAGCTGTG GTCCCTCCCT ATGTTGGTGT GGGAGCAGTA
  CCTGGTGCTC TTAGGAGGTT TGTTTTCAAC ACAGCTTTAC CCGGGCCTTT GCTGCTCCAG
  GAGGAGGCCA GGCCCAGGCA GAGGTGGCCT GGGCTTTAGG TGGGCCGTGG AGGAAGAGTC
  ACAGGTTGAG GTTCCCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37391798	NES08749468	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27152677					SNP	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391798	NES08749468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35572426 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr373039	regulatory region 373039			660 bp downstream
Rr555758	regulatory region 555758			986 bp distal
Rr555759	regulatory region 555759			1585 bp proximal
Tssr17486	transcription start site region 17486			1842 bp downstream