rs27152676 SNP Detail

Summary

• ID
  rs27152676
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35572532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGGTT GCCTGTTTCA
  TTCACTGGTG CAGACAGAAC TCCCTCAAGG GATCCTTAGG ATTGAATTAT TTCTGTTTTG
  TTCACCTGTG CTGTACCCTG GGGACAAGGA CAGAAATCAG CTGTGGTCCC TCCCTATGTT
  GGTGTGGGAG CAGTACCTGG TGCTCTTAGG AGGTTTGTTT TCAACACAGC TTTACCCGGG
  S
  CTTTGCTGCT CCAGGAGGAG GCCAGGCCCA GGCAGAGGTG GCCTGGGCTT TAGGTGGGCC
  GTGGAGGAAG AGTCACAGGT TGAGGTTCCC AGGAGTGCCT GGCTTGAGCT CTGAAATGGG
  TGTGGATTAA GACCAGCTGG ATAGGAAGCG GAGCTCTGGG GGTGGGGGCT GGCGCACGGG
  GGGGGGGGGG TGGGGGGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37391797	NES08749469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27152676					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391797	NES08749469	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35572532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr373039	regulatory region 373039			766 bp downstream
Rr555758	regulatory region 555758			1092 bp distal
Rr555759	regulatory region 555759			1479 bp proximal
Tssr17486	transcription start site region 17486			1948 bp downstream