rs27149944 SNP Detail

Summary

• ID
  rs27149944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:15529798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGTTC TATAAGAATT
  GCTGTGGTCA TGGTGTCTCT TCATAGCATC AGAAACCATA AGACAGAGAC ACTATATAAA
  AGTATAAGAA TAATCAATAT TTAAAAGAAA ATAGAAAAGA GACATACAGA ATATATTATC
  AGTATTCACT CATCATATGT AAAATTTAGA AGAGAAATAT TTCTGAAGAA AATGTGTATC
  R
  CAGAATGTTT AAATGCTCCA CATCATGTAA TATGTTCACT GATAATGCAT AAACAGGAAT
  CCCTCAAGAG CCTTGAATAT TCTCACATTC AAGGCATTTT TCCTAGAATA CAGGGGAAGT
  TTACTTTGTT AACAGCAGAA GTGCATTCTC TATTCTTAAA CTCTGGTCTT CCCACTCTAC
  ATTTTTAGTT ACTTCTTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37351069	NES08813165	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27149944					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37351069	NES08813165	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15529798 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	1492 bp upstream
Rr552160	regulatory region 552160	1002 bp proximal
Tssr16295	transcription start site region 16295	1484 bp upstream
Tssr16296	transcription start site region 16296	1540 bp upstream
Tssr16297	transcription start site region 16297	1712 bp upstream