rs27149942 SNP Detail

Summary

• ID
  rs27149942
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:15529844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGAAAC CATAAGACAG
  AGACACTATA TAAAAGTATA AGAATAATCA ATATTTAAAA GAAAATAGAA AAGAGACATA
  CAGAATATAT TATCAGTATT CACTCATCAT ATGTAAAATT TAGAAGAGAA ATATTTCTGA
  AGAAAATGTG TATCGCAGAA TGTTTAAATG CTCCACATCA TGTAATATGT TCACTGATAA
  K
  GCATAAACAG GAATCCCTCA AGAGCCTTGA ATATTCTCAC ATTCAAGGCA TTTTTCCTAG
  AATACAGGGG AAGTTTACTT TGTTAACAGC AGAAGTGCAT TCTCTATTCT TAAACTCTGG
  TCTTCCCACT CTACATTTTT AGTTACTTCT TATGGCTTGA GGATTATCTT TGTATTTTGC
  AATTACATTA CAGAAATTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37351067	NES08813167	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27149942					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37351067	NES08813167	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15529844 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	1446 bp upstream
Rr552160	regulatory region 552160	956 bp proximal
Tssr16295	transcription start site region 16295	1438 bp upstream
Tssr16296	transcription start site region 16296	1494 bp upstream
Tssr16297	transcription start site region 16297	1666 bp upstream