rs27149941 SNP Detail

Summary

• ID
  rs27149941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:15529894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTAAAA GAAAATAGAA
  AAGAGACATA CAGAATATAT TATCAGTATT CACTCATCAT ATGTAAAATT TAGAAGAGAA
  ATATTTCTGA AGAAAATGTG TATCGCAGAA TGTTTAAATG CTCCACATCA TGTAATATGT
  TCACTGATAA TGCATAAACA GGAATCCCTC AAGAGCCTTG AATATTCTCA CATTCAAGGC
  W
  TTTTTCCTAG AATACAGGGG AAGTTTACTT TGTTAACAGC AGAAGTGCAT TCTCTATTCT
  TAAACTCTGG TCTTCCCACT CTACATTTTT AGTTACTTCT TATGGCTTGA GGATTATCTT
  TGTATTTTGC AATTACATTA CAGAAATTAA AAACTAAAGT AGTTGTAACA ACTCCAAGAG
  CTAGGGATGG TGATACATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37351066	NES08813168	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27149941					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37351066	NES08813168	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15529894 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	1396 bp upstream
Rr552160	regulatory region 552160	906 bp proximal
Tssr16295	transcription start site region 16295	1388 bp upstream
Tssr16296	transcription start site region 16296	1444 bp upstream
Tssr16297	transcription start site region 16297	1616 bp upstream