rs27149937 SNP Detail

Summary

• ID
  rs27149937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:15531668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTCTC AATGCATGGA
  TCTCTTTGTT TCCTTTGGAC TGTCTGTCTT TCTATTTCTC CATTGAGTCA GCAAGGAGTC
  CAAGCCTTTC AGTGCAGTAA TGGAGTCTCT TTGCCTTCTG ACTATGTGTG TGACTTTACA
  GACCACTGTG GGGACAACAG TGAAGAGCAG CAATGTAAGT GTCATTTGCC TTTCCCAATT
  Y
  TAGGTCTTTG TTTACCTTCA TATAGGAGTT TGTGAAGAGC CATGGGAATC CAACTAGAGT
  CCTAGCCTGT GAATGGTTTA CTTTCAGAGG CTCCAAGGGT GGTGGCATAT TCTTTAATAC
  ATATGATCCA TGTATAAAAT TATTATAATA TCAAATCACT GAGAGTTTAA CTAGGTTGAA
  AATATTTTGA ACAGTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37351061	NES08813128	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27149937					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37351061	NES08813128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15531668 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	Intron
Rr552160	regulatory region 552160	368 bp distal
Tssr16295	transcription start site region 16295	341 bp downstream
Tssr16296	transcription start site region 16296	329 bp downstream
Tssr16297	transcription start site region 16297	145 bp downstream