rs27149936 SNP Detail

Summary

• ID
  rs27149936
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:15531915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATATCAAAT CACTGAGAGT TTAACTAGGT TGAAAATATT
  TTGAACAGTT TTAACTGATT GTAAGAAAGT GATAAATAGA AATTTAGCTT GGAAGTTTGA
  S
  TAGTGAAGCA AAATTTCAAT GACAGTCATT AATTTACTTG CAAAATACTA GAATGGAAAT
  TATGAGCTGA AGTACGCATT TAATACAGAC ATTAATTTTA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37351060	NES08813129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27149936					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37351060	NES08813129	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15531915 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	Intron
Rr552160	regulatory region 552160	615 bp distal
Tssr16295	transcription start site region 16295	588 bp downstream
Tssr16296	transcription start site region 16296	576 bp downstream
Tssr16297	transcription start site region 16297	392 bp downstream