rs27148649 SNP Detail

Summary

• ID
  rs27148649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20676458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAAGTAA ACACTCACTC
  GCTGAAGTTC TCAACAGAAC TTTGTGACAT TTCTCCTTCA CCCTCTTTTC AGAGGTTAGA
  AAGGATTAAA AGAAAGCTAG TTCCCTCCCA CAAATGTGAA AAACACTGTC CCGTAGAGTT
  TGGTTTTTTT AAATAATTTC CATGAAAAAT CACCCCACTG ATATTAGGTC TGCCGTTTAA
  Y
  GACGGAGTGG TGTCCATTTA ATCATGGTGC CTGTCTGGAA TGCAGCATCG AGAAAGTAGG
  GTTGGTGTCT GGCTGCTCCT TAGTTGGCCT TTGGGGAAGG AGTAGCCACA AGATGTCCCC
  ACCCCTCCGT GTGCCCTCAG GAATTTGCAA ATGAGGCTCT GTGAAAATAA GAACTGCATC
  AGCAGCTTCC TCTGGGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ
ss37360293	NES08781740	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ
rs27148649					SNP	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360293	NES08781740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20676458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Etl4	enhancer trap locus 4			Intron
				Noncoding-Transcript-Variant
Rr372880	regulatory region 372880			within coordinates
Rr552588	regulatory region 552588			1513 bp proximal
Rr552589	regulatory region 552589			1787 bp proximal
Tssr16445	transcription start site region 16445			1943 bp downstream
Tssr16446	transcription start site region 16446			1921 bp downstream
Tssr16447	transcription start site region 16447			1801 bp downstream
Tssr16448	transcription start site region 16448			189 bp upstream
Tssr16449	transcription start site region 16449			217 bp upstream
Tssr22831	transcription start site region 22831			559 bp upstream
Tssr22832	transcription start site region 22832			37 bp downstream
Tssr22833	transcription start site region 22833			64 bp downstream
Tssr22834	transcription start site region 22834			98 bp downstream
Tssr22835	transcription start site region 22835			1712 bp downstream