rs27137019 SNP Detail

Summary

• ID
  rs27137019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20961965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTAGAG CACCGAGAAC
  ATATGCCTAA CTGCAACACA CAATGGCCAC CATCTCAGAC TTGAATAGTA ACTCGGTTTT
  ATGGCCACTG AAAACGTCTG TGAATGCAAT CTAGGGTACT GCTGTTCTCA AATTTGGGTG
  ATCATTGGTA TATCACAAAA CTCAATCTGG AGTCAACAGT CCCATGTGAC TTCCAGGGAT
  Y
  GCTAACCATT ACACTAATGA TTAGACTAGA AACCTCGAGT TCAAAAAGTT ACTCAAGTGA
  CCCCAATTTC TCTGACTGAA GATCCTGCCC AGGTAGGGGT CGCCACTAGA AACTCCTGAA
  AGTCCTTCCA CCTCTGCTGA AAAACAACTA ACTTGAAAAG GTCCATCTAC CTGAGACCAC
  TGAGTTCTAC CTTCACAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37358740	NES08785424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137019					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358740	NES08785424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20961965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgap21	Rho GTPase activating protein 21			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr552639	regulatory region 552639			1033 bp proximal
Rr552640	regulatory region 552640			1988 bp proximal