rs27137016 SNP Detail

Summary

• ID
  rs27137016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20963290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTACAT TTCACTAAAC
  CAACGTTCTG GCCCATGCAC CATACTGGCA ACAGTCCTTC AAGAAAGCAC CAGCACTGTG
  GTAGAGAACT TTGTGAGAGA TGGTGGGTCT CAGAGAAGTC CACTACCTCC ATGTTTGGTT
  TCTGCCTTTG TTTCCTTACT GGGTTTCTGT CCCTTCAGAG ACTGAAGAAC AAACTGGAAT
  R
  CCAAGGAGGA AGACTAGGGA CATGAGCGCA GCTCCTAACT TCAGCTCCTC ACCAGAATCT
  GCAAGTGCAA CCTAGGACTA ACCTGAGCTT TTTATGTTCC TGTCTTGTTC TCTGTTTCAA
  ACCTGTGGAG AAACACGAAG GAATGAATGA TGACTGAAGT AAAAGGCAAT TTCCTAAAGC
  CTTATAATAA AGATCTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37358737	NES08785320	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137016					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358737	NES08785320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20963290 () rs orientation: forward

Symbol	Name	Function Class
Arhgap21	Rho GTPase activating protein 21	Intron
Rr552639	regulatory region 552639	271 bp distal
Rr552640	regulatory region 552640	663 bp proximal
Rr552641	regulatory region 552641	1520 bp proximal