rs27137015 SNP Detail

Summary

• ID
  rs27137015
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20963386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATACCAAG GAGGAAGACT AGGGACATGA GCGCAGCTCC
  TAACTTCAGC TCCTCACCAG AATCTGCAAG TGCAACCTAG GACTAACCTG AGCTTTTTAT
  K
  TTCCTGTCTT GTTCTCTGTT TCAAACCTGT GGAGAAACAC GAAGGAATGA ATGATGACTG
  AAGTAAAAGG CAATTTCCTA AAGCCTTATA ATAAAGATC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37358736	NES08785321	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	G	G		T	T	G	G	G	G	G	T	T
ss45269087	mCV23553197	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					G
ss146342389	ENSMUSSNP259969	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137015					SNP	G	G	T	T	G	G	G	G	T	T	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358736	NES08785321	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20963386 () rs orientation: forward

Symbol	Name	Function Class
Arhgap21	Rho GTPase activating protein 21	Intron
Rr552639	regulatory region 552639	367 bp distal
Rr552640	regulatory region 552640	567 bp proximal
Rr552641	regulatory region 552641	1424 bp proximal