rs27137014 SNP Detail

Summary

• ID
  rs27137014
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20963450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAAGTGCA ACCTAGGACT AACCTGAGCT TTTTATGTTC
  CTGTCTTGTT CTCTGTTTCA AACCTGTGGA GAAACACGAA GGAATGAATG ATGACTGAAG
  K
  AAAAGGCAAT TTCCTAAAGC CTTATAATAA AGATCTGACT TTAAAATGAG TGCCCCAAGC
  ATTTCCTTCC CTCACTCACA TACCATTCCC TATTATTTCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37358735	NES08785322	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27137014					SNP	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358735	NES08785322	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20963450 () rs orientation: forward

Symbol	Name	Function Class
Arhgap21	Rho GTPase activating protein 21	Intron
Rr552639	regulatory region 552639	431 bp distal
Rr552640	regulatory region 552640	503 bp proximal
Rr552641	regulatory region 552641	1360 bp proximal