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rs27137013 SNP Detail
Summary
  • ID
    rs27137013
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:20963455 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GTGCAACCTA GGACTAACCT GAGCTTTTTA TGTTCCTGTC
    TTGTTCTCTG TTTCAAACCT GTGGAGAAAC ACGAAGGAAT GAATGATGAC TGAAGTAAAA
    R
    GCAATTTCCT AAAGCCTTAT AATAAAGATC TGACTTTAAA ATGAGTGCCC CAAGCATTTC
    CTTCCCTCAC TCACATACCA TTCCCTATTA TTTCCAGAA                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37358734 NES08785324 PERLEGEN MM_PANEL2 f SNP G A A G G G A G G G G G A A
ss45316835 mCV23553198 ABI CRAMUS_MOUSE f SNP G G A G
ss146342394 ENSMUSSNP1273688 ENSEMBL ENSEMBL_Sanger f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27137013 SNP G G A A G G G G A G G G G G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37358734 NES08785324 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:20963455 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Arhgap21 Rho GTPase activating protein 21 Intron
Rr552639 regulatory region 552639 436 bp distal
Rr552640 regulatory region 552640 498 bp proximal
Rr552641 regulatory region 552641 1355 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory