rs27137011 SNP Detail

Summary

• ID
  rs27137011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20963667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTTATA ATAAAGATCT
  GACTTTAAAA TGAGTGCCCC AAGCATTTCC TTCCCTCACT CACATACCAT TCCCTATTAT
  TTCCAGAAGC CAATATTCAG AACCCAGAAA AGAAAGTAGG CCTCACTGAT CAAACCTTCC
  ATATGAACCC CGATATACCA AAAGACACTA GCATAGCCAA CACCTTACCC GCAGACCAAG
  Y
  ACTAGTAAAA TGATATCCAG AAGCGACTTC TAAATGTACT AGCCCTATCT GATATCTAAT
  AATCACCATG CTGGAGAGAT GGCTCAGTCG GTAAGAGCAT TCACTGCCCT TCTAATGGTC
  CTGAGTTCAA TTCCTAGACC CACATGACAG CTCAACTGTC TGATGCTGTC TGCTGCTATG
  CAAATGTACA TGCAAAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37358732	NES08785330	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137011					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358732	NES08785330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20963667 () rs orientation: forward

Symbol	Name	Function Class
Arhgap21	Rho GTPase activating protein 21	Intron
Rr552639	regulatory region 552639	648 bp distal
Rr552640	regulatory region 552640	286 bp proximal
Rr552641	regulatory region 552641	1143 bp proximal