rs27137004 SNP Detail

Summary

• ID
  rs27137004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20965087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACCCTAA GCCAAAATAA ACCCTTCCCT CCTGAGGTAC
  TTCATGGCAG GTATTTTGTC ACAGAGACTA TAAAAGTTAC TTAGACAACG TCTTATTACC
  Y
  CAAAGACAAC ACAGAGACTA TTTATAATAG TTTCACACGT TTAATTCCGC AAGGTCGATT
  AAAAGTAGAG AAATACTTGG ACAGTCTTTA AATACAGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37358725	NES08785213	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C		C		C	C	C	C	C	C	T
ss45295886	mCV23553477	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss146342421	ENSMUSSNP5606395	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137004					SNP	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358725	NES08785213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20965087 () rs orientation: forward

Symbol	Name	Function Class
Arhgap21	Rho GTPase activating protein 21	Intron
Rr552640	regulatory region 552640	909 bp distal
Rr552641	regulatory region 552641	within coordinates
Rr552642	regulatory region 552642	1030 bp proximal
Rr552643	regulatory region 552643	1641 bp proximal