rs27137003 SNP Detail

Summary

• ID
  rs27137003
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20965117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACGCATG TGACCAGCAC
  CTTCTGTTCT TTGCACAATG TCTTCCCTGC CACTATGCAC CATATCCTGG TAAACCCTAA
  GCCAAAATAA ACCCTTCCCT CCTGAGGTAC TTCATGGCAG GTATTTTGTC ACAGAGACTA
  TAAAAGTTAC TTAGACAACG TCTTATTACC CCAAAGACAA CACAGAGACT ATTTATAATA
  S
  TTTCACACGT TTAATTCCGC AAGGTCGATT AAAAGTAGAG AAATACTTGG ACAGTCTTTA
  AATACAGTAA CCTTTCATTT TAGAAATCTA ATCACATCAA CCAGAAAGAA AAACAAGGGC
  CTACCATATG GTCTTTCTGT AACAGAAAAT AGCTAGCTGC ATTCAATAAC AGCATCTGTG
  CATCTATCAA CACTAGCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37358724	NES08785214	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137003					SNP	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37358724	NES08785214	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20965117 () rs orientation: forward

Symbol	Name	Function Class
Arhgap21	Rho GTPase activating protein 21	Intron
Rr552640	regulatory region 552640	939 bp distal
Rr552641	regulatory region 552641	within coordinates
Rr552642	regulatory region 552642	1000 bp proximal
Rr552643	regulatory region 552643	1611 bp proximal