rs27130950 SNP Detail

Summary

• ID
  rs27130950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11501901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCTAAGT GGAAAGAAGT
  CATTGTCTTA AGACCTCCAC GCCCTTGGGA GATTCAGAAT GAAAGTCCTG CCCAAAGCAT
  GGTTCCCTAA GTAAGAGCCA CAGAAAGCCA CCAGGTCCGG AGAGCTGAGC CAGCACCTAC
  AATGTCATCA GGCTTATATG CTCACATACT CATGAGCCCA GTGCTCTGGA TGCCAGATGG
  R
  AAGGATGACA GGTGGACACA CTTGAGGTCA GCATTATTGA TGAGTACCAC TGAACTCAGA
  CCTGCTGCTT ACTCACATAC TAGTCCTACT GTCGTTAGTT CTTAATGCAA TCTTGCTGCA
  TGTGCCAGCA TCCTGTAGGT AATTATACAG AAAGGAAACC CGACCAGCTG GTGAACTACA
  GGATAGCATG GCTGAAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37336979	NES08815415	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27130950					SNP	A	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336979	NES08815415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11501901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
Rr551793	regulatory region 551793			1480 bp distal
Rr551794	regulatory region 551794			within coordinates
Tssr22628	transcription start site region 22628			1290 bp downstream
Tssr22629	transcription start site region 22629			1311 bp downstream
Tssr22630	transcription start site region 22630			1353 bp downstream