rs27121449 SNP Detail

Summary

• ID
  rs27121449
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21284620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCCTCG TTAATCTCCA
  CCCTCTGTCA TGATATAACT ATCTTATGGA ACGGATGGAA AAAGAGCCCA GAAGTACCAT
  CAGAACTCTG ATGTCTTCTC CTGCAGGGCC AGGCTTCAGC CTTTTCCTCT TTCAGCATTA
  AAATTTCCCT AGGAAATTTT AATTCTTAGG GGCTATTGTT TTTAGCATCC TTGATTTAAC
  W
  GTGAAGGACA TTCAGATCTA AACCTGAAAA CTATGGCACT AAGACATGCC TAGCCACCTC
  ACACGTGTCC ATGTTCTCTT AGGCTTCAGT CACATGCTCT TTTGGCTGTC TATGTGTTAC
  GGCCTGGCTC AAGCCCTTCC TGTTGGGTCG CCTATTGTAC TGCTCAATCC CCTTCTCACA
  GTCCTGTGAA AGGGTAGCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357470	NES08795473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121449					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357470	NES08795473	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21284620 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	885 bp proximal
Rr552699	regulatory region 552699	1173 bp proximal