rs27121447 SNP Detail

Summary

• ID
  rs27121447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21285322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAAGGG CTTTACATAC
  TGAATTCATT TACTCCTCCT TGGGACCCCA GAAGGCAGCG ATTGCTATCA TTCCTTTTAT
  GGATAAATAG TCAGAGAGAG AGGTTAGGTG TTTTTGTTTC CCCCCTTTGA CATTACAGTT
  TAGAAGTGAT GAACTGAGAT GTGAGTCTTG CAGTTTGTCA TCTGTCCATG CCCTTCACAT
  R
  ATAGTGTTGC CTAGTTCTGA CTCAGCATGA ATGCGGGTCT GAACCAAGAG CCTTGGGGCC
  AATCTATAGA ATTGTGCTAG ATGAGTGTTA AAAGGTTTGA GTTAACTTTG CGGTTGCTTC
  TAGTCCCTTC ATTTCACATG TGGGACAGAA CACAGAGAAA GAGGACCTCA TGCCAATTCC
  ACAAATATTC CAGTTTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37357468	NES08795397	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27121447					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357468	NES08795397	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21285322 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	183 bp proximal
Rr552699	regulatory region 552699	471 bp proximal
Rr552700	regulatory region 552700	1880 bp proximal