rs27115704 SNP Detail

Summary

• ID
  rs27115704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11713918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTCAAA TGGGAGGCTC
  AGGGAAAGAA AATGCTGAAA TGCACACTGA CCTCATATAA AGAATGGGAG GGGTGTGTTA
  ACCTGACCAC TCTTGAACTC CAGATATAAG AGTAGGCCAG GGATTCCTGC CCATCTTAGA
  CTCTCAACTG ACTTGATAAA GAAGCCTGAT CCACAGGTTC TGAGAAACAG AAAGAGGTGT
  Y
  GCCCCATGCT CCATGCTAAT GATCATTAGG ACTGGCGATG TGAGAACTTT GAAAGTGGCA
  TAACTCTAAG TCCCAGTTTC TATAACTTCA TCTGATATAT GTATTCATAA GCTCGCAACG
  TATAAATACC TGCCCTGTAT GTGTATGGGG CTTAGCACTG GGGAAGGAGC ACTAGGGAAC
  TATGCAATAC ACTTACAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37336333	NES08809893	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27115704					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336333	NES08809893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11713918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15ra	interleukin 15 receptor, alpha chain			Intron
				Noncoding-Transcript-Variant
Rr551846	regulatory region 551846			238 bp distal
Rr551847	regulatory region 551847			1109 bp proximal
Rr551848	regulatory region 551848			1205 bp proximal