rs27098650 SNP Detail

Summary

• ID
  rs27098650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6545548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATTTTA CCATCCTCTT
  TCCCAGGCCT TCCCTCCCTG ATGCCGCCCA TTCCTCCAGA AAAGAAAAAG AAACCACACT
  TTGGTCTTCC CTCACTAGTG AAGCAGTGGC CTTTCAGAGG CAACTGAGCA AGCAGGCCCC
  GCCCTGAGAA AGCCAGCACA GGTGTCACTA GGAATCAGCT TTTGTCAGAG TAGGAGCAGG
  R
  CTCGGAACCT CATGCCCAGT GAGAGGTTTG GCCTAGGGAA AGAGCCACCT TTCTTCTGTT
  TGGTAGGCCC ATGGTTGTTG ACCTGACTGA AGAAAGGGGC CTGAGGGGCC AGCTGAAACC
  AGAGGGTGGG CAGCCAGAGC TTTCGCTGAC ACCAGCTCAG GTGTCCTGGC ACGGGCGAGA
  AGAGAAGGGA GCAGATAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss37318085	NES08817294	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs27098650					SNP	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37318085	NES08817294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6545548 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	mRNA-UTR
Rr551418	regulatory region 551418	1827 bp distal
Rr551419	regulatory region 551419	244 bp distal
Tssr22446	transcription start site region 22446	1991 bp downstream