rs27097474 SNP Detail

Summary

• ID
  rs27097474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6823294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGAATT TACATTTTAT
  GTTCTCATCT CACTGTCAAA AGATGGGAAC TTAAGTTAGA GATTTCAGAG AGTCAAGAAA
  AGTTGCTACA AAGACTCCAG AAGTGAAAGC ACTCTTCTCT AAGGAGCTGG AGGGTAAGCC
  TGCTCCCTGT ACTGTCCATC TTCTGCCTCC AGGGCACTCG GACAGTGTGC AGCCACGAGC
  W
  CACTGCAGCT GCACAGCTCT TTTCTTTGAA CTCTAGAGGT TTAAAATCTT CCTCTATATG
  GGAGACATAA CACGGTCTGT GTTTCATCAT CTTTCCTAAT TTCTGCTTCC AGCAGGCTTT
  TCCTTAAGAA GGACTATGAG ACAAGAGAAA TACTTCATTA TGAAAATAAA AAACAAAAAA
  ACACATTGCC CTTTTTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317106	NES08819018	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27097474					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317106	NES08819018	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6823294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr372727	regulatory region 372727			within coordinates