rs27095356 SNP Detail

Summary

• ID
  rs27095356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3623253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGATTTT TGCAGTCAAA
  ATAGTCTTTA AAGTCGGTTT GTTTGGATAA ATGTTCAATG TTTCAAATTT GCCTTATTTT
  CCCCAACTCC CCATCCTGGG AGTGAGTCTG ATGTTCAGGT AGGATTGTGG TGCTGGTTCA
  AGGCTGTGAG TTCCCTGTGA CACCATCTGA ATTTCCTCTG CCTTCTATCA AAGACCGCCA
  S
  GCTGGATGTC ATAGACCACT GAGGTGTGAC AGAAGGGATT TTTGAGCCAC CCTAGCCTGG
  GTTTTATAGT CCCAGCCACT TTTATCTTGT TTTAAAATTC TAGCTACTAA TTCATTCTGA
  GTCAAGATCT CTACCAGCCA TCATTTCCTC TTTTCTTCTT CCCTCCCCTC CCTTCCTCAC
  CCCTCTTCCC CTTCCTTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328081	NES08847295	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss146262524	ENSMUSSNP4571908	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27095356					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328081	NES08847295	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3623253 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Gm75735	predicted gene, 75735	1418 bp upstream
Rr550923	regulatory region 550923	1326 bp proximal