rs27093257 SNP Detail

Summary

• ID
  rs27093257
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6261879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGATGAG GAAGCTTCTA GATTTTCTCA CAATGAGTAA
  TGTGCAGGGG GACTTAACAG GAAACACCGT CCCATTCTGG AACAGAGAAC ATTCAGGGTC
  S
  GGAAACCTTG TATTGCCTGT CTTCAGCTCC CTGACTCCCA CCCTATCCTA CCTCTCCTCT
  GCTCCCAACC CCTCCCCACC CTCCCCCCAC CCCACCCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37319080	NES08824367	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	G		C		C	C		C	C	C		G
ss45235923	mCV25284810	ABI	CRAMUS_MOUSE	f	SNP		G						C		G
ss146277224	ENSMUSSNP5906735	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss320210437	CHEV_2_6178114	CHEVERUD	SCREENING_POP	f	SNP													C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27093257					SNP	G	G	C	C	C	C	G	C	C	G	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37319080	NES08824367	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6261879 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	within coordinates
Gm46730	predicted gene, 46730	within coordinates
Rr551353	regulatory region 551353	746 bp distal
Rr551354	regulatory region 551354	8 bp distal
Tssr22443	transcription start site region 22443	780 bp upstream