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rs27053017 SNP Detail
Summary
  • ID
    rs27053017
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr11:99254484 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CTTGGCAGAA AGTTGGTAAG GATTTGACTG TTTTCTCCAC
    TCCTTTGAGC TTCCATGGAG CAGTTCGACT GTTGGGTGGA AAGCCTGCCT TTACTTGAGC
    K
    TCTCAATGGA ATCAGGAAGA TACTTGAGAA ACAAAAGAGC AATTTTCCTA GAGCAGAACG
    ACCAGTGACC TCGGAGATCC CACGCGCTTC GTGAGATTTT                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss37288436 NES08565344 PERLEGEN MM_PANEL2 f SNP G G G G G G G T G T G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs27053017 SNP G G G G G G G T G T G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37288436 NES08565344 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:99254484 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Krt28 keratin 28 1214 bp downstream
Rr456490 regulatory region 456490 732 bp proximal
Rr456491 regulatory region 456491 776 bp proximal
Rr456492 regulatory region 456492 972 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory