rs27053014 SNP Detail

Summary

• ID
  rs27053014
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99255672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAATACG GTGTGATCGA ATTGATAGCT GTTGAAAACT
  AGAGCGAAAC CCAATAAAGA CTACCTACTG GGTGGGTGGG TGGGGAATAA ATCACAACTC
  R
  TTATTAATCA CCAGCAAACG GAAGTGTGTT GCCATCAATT ATTTTATTTG GACACAAACA
  CCCAGCATCC TTTGAAAGTC ACTAAGAAAA CAGGTATTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37288433	NES08565298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27053014					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288433	NES08565298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99255672 () rs orientation: forward

Symbol	Name	Function Class
Krt28	keratin 28	26 bp downstream
Rr456490	regulatory region 456490	104 bp distal
Rr456491	regulatory region 456491	391 bp distal
Rr456492	regulatory region 456492	195 bp distal
Tssr110651	transcription start site region 110651	1253 bp downstream