rs27041201 SNP Detail

Summary

• ID
  rs27041201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98592971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCTGAG AAGCCAGGAG
  GACCTGAGCT GGACAAAGAG CCTGGCCCAG GTGAGCACCC TCAGTATCCT TCCATCTACA
  GTGTGCCACC TACAAGCTGT GTCACCCCGA GGAGCTGGTG TTGCTGGGCC ACTCTCTGGG
  GATCCCGAAG GCTTCCCTGA GTGGCTGCTC TAGCCAGGCC CTGCAGCAGG TGAGTATTTT
  Y
  GGAAAAAGGA GGACCAGGAG GAGAAGGGGG AGGAGGGGGA GGAGGAGAAA GAGGGAGAGG
  AGGGGGAGAA GGGGGAGGAG GAGGGGGAGG AGGAAGAAGA GGGGGAGGAG GGGGAGGAGA
  AGGAGGGGAA GAAGGAGGAG GAGGGGGAGA AGGAAGGACT ACATCCTACT ATTTGGGCTC
  CTGAAGAGAG CAAGCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289937	NES08558152	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041201					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289937	NES08558152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98592971 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	Intron
Gm38985	predicted gene, 38985	555 bp upstream
Rr456242	regulatory region 456242	1795 bp distal
Tssr104770	transcription start site region 104770	1939 bp downstream
Tssr104771	transcription start site region 104771	1775 bp downstream
Tssr104772	transcription start site region 104772	799 bp downstream