rs27037899 SNP Detail

Summary

• ID
  rs27037899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96679059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CCTTACTGGA GTTCCTAGTT
  Y
  AACAATTAGC AGCAACCTAC CTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37293922	NES08562548	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C		C	T		T
ss323822797	CHEV_11_96649547	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27037899					SNP	C	T	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293922	NES08562548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96679059 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	894 bp upstream
Cpgi3668	CpG island 3668	607 bp proximal
Rr455508	regulatory region 455508	474 bp proximal
Rr455509	regulatory region 455509	1027 bp proximal
Tssr104569	transcription start site region 104569	885 bp upstream
Tssr104570	transcription start site region 104570	916 bp upstream
Tssr104571	transcription start site region 104571	980 bp upstream
Tssr104572	transcription start site region 104572	1002 bp upstream
Tssr110346	transcription start site region 110346	755 bp downstream