rs27026653 SNP Detail

Summary

• ID
  rs27026653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121326041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGCGCGTGTT CCCTTCTGGT CCCCGACTCC CCCTCCTCTG CGTCACCTGA CCGCATTCTG
  CACCTCAACT CTCCATGGAG CAGCTGCTGC GCGCCCAGCT TCACACCACA ACACTGCGGG
  CCTTTGGGAG CTCCGGAGGG GGCTGCATCA GCGAGGGCTA TGCCTACTAC ACTGACAGTG
  GCCCCGTGTT TGTCAAGGTC AATCGCAGGA CACAGGTGCG CTGCCCGGTA TACAAGGATA
  AAGTCTAGGA AGGGGAAAGA GGAATGCAGG ATTCTGAGAA GTGGTGGAGG AACTAGACCT
  R
  GCGTACCCAA CGCTCTGCTG AGGGGTCAAC CAGCACTTGC ATGCAGGCAG CTTCTTGGGA
  CCAGAGGGTT TCTCTTTGCT GCATGATTAT TTTCTTGCTT TTGCTCCCAC ACAGGGGCTT
  TAAATTTTCT GTAATCACTG ACCATGGGGG AGGTGAGTCT TAGCGGTAAG CTGCTTCTGC
  CCATGTCTGG TCTCTGCTCT GACCTCAGCT CCTGCATTTT CCCAGCAGGT GAAGAGAGAC
  AGGATTCCCA GGGCTAGGTT AGCACCATCG TTCTCAAAGG CTCTGTTGGT TTCTAGGACG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236090	NES08513768	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss38791622	mCV27546111	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026653					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236090	NES08513768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121326041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	within coordinates
Fn3k	fructosamine 3 kinase	Intron
Rr461974	regulatory region 461974	1793 bp distal
Rr461975	regulatory region 461975	237 bp distal
Tssr106404	transcription start site region 106404	228 bp downstream