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rs27026653 SNP Detail
Summary
  • ID
    rs27026653
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:121326041 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                                     
    CGCGCGTGTT CCCTTCTGGT CCCCGACTCC CCCTCCTCTG CGTCACCTGA CCGCATTCTG
    CACCTCAACT CTCCATGGAG CAGCTGCTGC GCGCCCAGCT TCACACCACA ACACTGCGGG
    CCTTTGGGAG CTCCGGAGGG GGCTGCATCA GCGAGGGCTA TGCCTACTAC ACTGACAGTG
    GCCCCGTGTT TGTCAAGGTC AATCGCAGGA CACAGGTGCG CTGCCCGGTA TACAAGGATA
    AAGTCTAGGA AGGGGAAAGA GGAATGCAGG ATTCTGAGAA GTGGTGGAGG AACTAGACCT
    R
    GCGTACCCAA CGCTCTGCTG AGGGGTCAAC CAGCACTTGC ATGCAGGCAG CTTCTTGGGA
    CCAGAGGGTT TCTCTTTGCT GCATGATTAT TTTCTTGCTT TTGCTCCCAC ACAGGGGCTT
    TAAATTTTCT GTAATCACTG ACCATGGGGG AGGTGAGTCT TAGCGGTAAG CTGCTTCTGC
    CCATGTCTGG TCTCTGCTCT GACCTCAGCT CCTGCATTTT CCCAGCAGGT GAAGAGAGAC
    AGGATTCCCA GGGCTAGGTT AGCACCATCG TTCTCAAAGG CTCTGTTGGT TTCTAGGACG
                                                                     
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37236090 NES08513768 PERLEGEN MM_PANEL2 f SNP A G G G G G G G G G G G G G G
ss38791622 mCV27546111 ABI CRAMUS_MOUSE f SNP A G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27026653 SNP A A G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37236090 NES08513768 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:121326041 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4346 CpG island 4346 within coordinates
Fn3k fructosamine 3 kinase Intron
Rr461974 regulatory region 461974 1793 bp distal
Rr461975 regulatory region 461975 237 bp distal
Tssr106404 transcription start site region 106404 228 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory