rs26987570 SNP Detail

Summary

• ID
  rs26987570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60090168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAGAGGGA AGGGGCCGGG GGACACAAAC AGGGTTCCCA
  GTCTACTCAC TAATGGGCCC TGATCCTTCG CCTATGCTGG TGCACAGAGA TGACTAGGGA
  R
  CTGTGTGTGT TTCTGGATAT ACGGGGTTAT TACCTGGTGG AGGGCTGGAA GGCAAAGGAA
  CAACTGAGAC CATCAAGGCC CCTCAAGGGT TATGAGCCAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37193309	NES08420737	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs26987570					SNP	A	G	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37193309	NES08420737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60090168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2979	CpG island 2979	481 bp proximal
Mir6921	microRNA 6921	1196 bp downstream
Rai1	retinoic acid induced 1	145 bp downstream
Rr448349	regulatory region 448349	815 bp distal
Rr448350	regulatory region 448350	481 bp proximal
Rr448351	regulatory region 448351	718 bp proximal
Srebf1	sterol regulatory element binding transcription factor 1	mRNA-UTR
Tssr108277	transcription start site region 108277	77 bp downstream