rs26973167 SNP Detail

Summary

• ID
  rs26973167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60091159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT GCCTCAAAAA CTGTCATCCC
  Y
  GCTGATTTCT GTAAGTCAGC TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37193306	NES08420740	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	C	C	C	T	C	T	C
ss38832044	mCV23675933	ABI	CRAMUS_MOUSE	r	SNP		G	A					G		G
ss132249179	ENSMUSSNP4238556	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26973167					SNP	C	C	T	C	C	C	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37193306	NES08420740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60091159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			158 bp distal
Mir6921	microRNA 6921			205 bp downstream
Mir6922	microRNA 6922			1929 bp downstream
Rai1	retinoic acid induced 1			1136 bp downstream
Rr448349	regulatory region 448349			1806 bp distal
Rr448350	regulatory region 448350			489 bp distal
Rr448351	regulatory region 448351			252 bp distal
Srebf1	sterol regulatory element binding transcription factor 1			Intron
				Noncoding-Transcript-Variant
Tssr108277	transcription start site region 108277			880 bp upstream