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rs26973166 SNP Detail
Summary
  • ID
    rs26973166
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:60092827 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACCGT CCAACCAAGC ATAGTCTGAC
    Y
    CTAGGATTCT ACAAAAATAC CACCT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37193304 NES08420742 PERLEGEN MM_PANEL2 f SNP C T C C C T C C C C C C T C
ss38860367 mCV23675922 ABI CRAMUS_MOUSE r SNP G A G
ss132249187 ENSMUSSNP2083128 ENSEMBL ENSEMBL_Sanger f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs26973166 SNP C C T C C C T C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37193304 NES08420742 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:60092827 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2979 CpG island 2979 1826 bp distal
Mir6921 microRNA 6921 1384 bp upstream
Mir6922 microRNA 6922 261 bp downstream
Rr448351 regulatory region 448351 1920 bp distal
Srebf1 sterol regulatory element binding transcription factor 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory