rs26955242 SNP Detail

Summary

• ID
  rs26955242
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:62738118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCA TCTCAGAGTC ATGGAAAACA
  S
  GGAACCAAAA CTCAAGCAGG CCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37186761	NES08417141	PERLEGEN	MM_PANEL2	f	SNP				G		C	C	C	C	C
ss38680596	mCV23975305	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		G		C
ss132288611	ENSMUSSNP6165936	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs26955242					SNP	C	C	C	G	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37186761	NES08417141	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62738118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxw10	F-box and WD-40 domain protein 10			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr386163	regulatory region 386163			231 bp downstream
Rr448938	regulatory region 448938			150 bp distal
Tssr102067	transcription start site region 102067			205 bp downstream
Tssr102068	transcription start site region 102068			189 bp downstream
Tssr102069	transcription start site region 102069			160 bp downstream