rs26955241 SNP Detail

Summary

• ID
  rs26955241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:62739292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTGCCC AGGGTACTAG
  TTTATAAGCA ATAGTTTGCA CCTGAGTCTC CAAACAGATT AGATTAACAA AAAAAAAAAA
  AAACCAGACT GTGGTCCTCT GCCAAAGCCT GGCCTAGCAG CTGGTCTGAG ACCATGTCAA
  GCTGTCTGTT TCTGGCTATA TAGACAGACA TTGCTGGACC CAGCGGGGAA CCTTCTTGGT
  Y
  CTGGGTATTG ACAGGAAAGT GTTGAAAGTG TTTGACTGGC TGGTTCTGGA CAGCAAAAGA
  AAGCAGAGGA GAGGTCTGAG ACCTGCAATT AGGAGAGGTC AGAGGTCAGA GGTCAGAGAC
  CTACAAAGGT CTAGAAGGTT TAGCCAGAGG TGGGTAAAGA GTGGGAGGGG TGGTCTCTAG
  GGGGAATTTT CAAGTTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37186760	NES08417142	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs26955241					SNP	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37186760	NES08417142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62739292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxw10	F-box and WD-40 domain protein 10			Intron
				Noncoding-Transcript-Variant
Rr386163	regulatory region 386163			1405 bp downstream
Rr448938	regulatory region 448938			1324 bp distal
Tssr102067	transcription start site region 102067			1379 bp downstream
Tssr102068	transcription start site region 102068			1363 bp downstream
Tssr102069	transcription start site region 102069			1334 bp downstream