rs26923970 SNP Detail

Summary

• ID
  rs26923970
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:16727148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAAACC ACCCCATTCT
  TCATTATTTA AGCAGAAATG CAAGTCTAGG AGTCTTAGCT GTCCTTTCCT TTCTTCTGTG
  CCTTGCAGTC GTTGGCTTTT TCATGGGGAA TGCTTGCTTA TATCAGCCGT TAAGCATCTA
  CATAACATGA AATGTGATAC TTCAGTAATT CATTTTGACA GGTGGAGATT AGGTGTTCTC
  W
  ATTCAGGGGC CTCCACTTTC ATTTTCCCTG ACTTAGCTCT CAGCCAGAAT CCTTCTGTGA
  GCAGCAATAC TGTGGAGGCT TCTGGCCCAG CCCAGCTAAG CAATAGGCCC ACAGAGGACT
  GATACATTAT TTATAGAGTG GCAAGTTCAA GGAAAATCTG GACTATGTAT CTACAGGGTG
  GGAGGAGCAG ATGTCCCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37087303	NES08384265	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26923970					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37087303	NES08384265	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:16727148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egfr	epidermal growth factor receptor			Intron
				Noncoding-Transcript-Variant
Tssr100415	transcription start site region 100415			852 bp upstream
Tssr100416	transcription start site region 100416			998 bp upstream
Tssr100417	transcription start site region 100417			1452 bp upstream
Tssr100418	transcription start site region 100418			1505 bp upstream