rs26913727 SNP Detail

Summary

• ID
  rs26913727
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4046975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTGTG CGTGCCTGTG TCCGAGTGTC GTGAGAGTAG
  AGGGGAAAGG AACAGAACAT GTGTGTGTGT GTGTGTAATT TTAGCCTGCT ACTTGGCATC
  K
  GAAAATTTGG GGTCTAATGT AAGAGACCGC TAGGAAGCCG GCGATGGGCA ATGAATTCTG
  CTCTTTGCTT TGAAAATTGA TCACTTTATT CATTGGTTAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37111255	NES08404632	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26913727					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37111255	NES08404632	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4046975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2503	CpG island 2503	1447 bp distal
Cpgi2504	CpG island 2504	within coordinates
Gm72847	predicted gene, 72847	within coordinates
Mtfp1	mitochondrial fission process 1	1544 bp upstream
Rr369115	regulatory region 369115	within coordinates
Rr441724	regulatory region 441724	1789 bp distal
Rr441725	regulatory region 441725	1720 bp distal
Rr441726	regulatory region 441726	1040 bp distal
Rr441727	regulatory region 441727	within coordinates
Rr441728	regulatory region 441728	1004 bp proximal
Rr441729	regulatory region 441729	1341 bp proximal
Sec14l2	SEC14-like lipid binding 2	64 bp downstream
Tssr100092	transcription start site region 100092	70 bp downstream
Tssr106530	transcription start site region 106530	1657 bp upstream
Tssr106531	transcription start site region 106531	1639 bp upstream
Tssr106532	transcription start site region 106532	1535 bp upstream