rs26913722 SNP Detail

Summary

• ID
  rs26913722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4049752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGAGAA GGCTGTTAGC
  TGTGCTTTCC TCTGGGAAGA GGGTGGACTC AGTTGGCAGA GACAGCTTCT AAGCCCTGGC
  AGTTGAACAG GCTTGCTTTC ATTCTCAGCC TGTCTCTTTG CAAGCTTGTT CCATTTCACT
  CAAATGCCCC TTCAAGACAG CTAAACACAG AACAAAAGCA GCAGGGCCTC CCTTCTGGGC
  Y
  GCTTTCTGGC TTTCTTGACG TCTTCCCCTC TTCTCACCCC TGGATAGATT GCATGAGGCG
  GGTAGTTAGC ACAGCACCTA CAGACTCCTA GTCCCTCGTC TCTGCAAGGG GCCCTGCAGA
  TGCCCTACTC TTTCCTCTTG GTTCTGATGA CAGCCTTGGC AACCCAAGTT CACTGTACTG
  TGATCTCCTT AGACCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37111250	NES08404610	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs26913722					SNP	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37111250	NES08404610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4049752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr441727	regulatory region 441727			1989 bp distal
Rr441728	regulatory region 441728			1647 bp distal
Rr441729	regulatory region 441729			1415 bp distal
Rr441730	regulatory region 441730			662 bp proximal
Sec14l2	SEC14-like lipid binding 2			Intron
				Noncoding-Transcript-Variant