rs26913533 SNP Detail

Summary

• ID
  rs26913533
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4146431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGCAGA GGGTCTAGCC TCCCCCGCCA AGGCTTGCTT
  GCTGTAAACC CTAGGCAGCA GTTATGAAAT TCAGATTGCT GAAAATCTGA GTTTTCTCAT
  K
  TTTCAAGTGG GGTTGGTAAT TGGAGAATGA CTCTCATGGG CTTTGTTACC AGGGTTAAAT
  GAAATGATAT CAATTGGATA CTGAGCAGTG GCTGATGCTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37111059	NES08403672	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26913533					SNP	G	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37111059	NES08403672	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4146431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr402391	regulatory region 402391			433 bp downstream
Rr441759	regulatory region 441759			232 bp distal
Rr441760	regulatory region 441760			83 bp proximal
Rr441761	regulatory region 441761			1034 bp proximal
Tbc1d10a	TBC1 domain family, member 10a			Intron
				Noncoding-Transcript-Variant