rs26912609 SNP Detail

Summary

• ID
  rs26912609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45050162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAATAAA GATTGTGTAA
  ATTTTCTTAA GTTAATATGA CTTTCATTTT ATAGTCCCCA CTTGCGGGAC GCAATGCGAA
  AGATTTTAGA AACCCAGTTG GAATAGCTCC AATTCAAAAA CTAAAGATCC TAAGTTCCAA
  ACCTGAGACT ACTTGAACTT GACATGAGAC CCCTAAGTAG GAACCTCCAC ACCTGACCTC
  R
  TGGCCTGGGT CACAGACAAA ATGGATCTGC ACTCAGCAGA CTATATTAAA ACTGTCTTCA
  GTCGATAGAT ATAAGATATA CATATTAGTT GGTCCTATTT CCAAACTTTC TTGTTTTGTA
  GCTGCAAACA TCTCCAAAAT CTAAGAAAAA GGGGGGCTGG AGAGATGGCT CAGTGGTTAA
  GACCACTGAT TGCTCTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37124036	NES08331941	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	G	G	G	G	G	A	G	G
ss38838140	mCV24282502	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss132087990	ENSMUSSNP3222879	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26912609					SNP	A	A	A	G	A	G	A	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37124036	NES08331941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45050162 () rs orientation: forward

Symbol	Name	Function Class
Gm12160	predicted gene 12160	1608 bp upstream
Rr445733	regulatory region 445733	1518 bp proximal
Rr445734	regulatory region 445734	1619 bp proximal