rs26908336 SNP Detail

Summary

• ID
  rs26908336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC ATCATCTGGG CTAGGCCTAA
  M
  CAACCAGTTG AATTTTTTTT TTTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37166973	NES08482968	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	A		C	A		C	A	A
ss132359901	ENSMUSSNP4336329	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					A
ss323730981	CHEV_11_69480076	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26908336					SNP	C	C	A	C	C	C	A	A	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166973	NES08482968	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557400 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	421 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	362 bp downstream
Gm24029	predicted gene, 24029	1260 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	within coordinates
Tssr102512	transcription start site region 102512	938 bp downstream
Tssr102513	transcription start site region 102513	900 bp downstream
Tssr102514	transcription start site region 102514	870 bp downstream
Tssr102515	transcription start site region 102515	732 bp downstream
Tssr102516	transcription start site region 102516	81 bp downstream
Tssr102517	transcription start site region 102517	59 bp downstream
Tssr108752	transcription start site region 108752	1644 bp upstream
Tssr108753	transcription start site region 108753	1454 bp upstream
Tssr108754	transcription start site region 108754	1254 bp upstream
Tssr108755	transcription start site region 108755	1209 bp upstream
Tssr108756	transcription start site region 108756	1179 bp upstream
Tssr108757	transcription start site region 108757	988 bp upstream
Tssr108758	transcription start site region 108758	749 bp upstream
Tssr108759	transcription start site region 108759	731 bp upstream
Tssr108760	transcription start site region 108760	669 bp upstream
Tssr108761	transcription start site region 108761	498 bp upstream
Tssr108762	transcription start site region 108762	425 bp upstream
Tssr108763	transcription start site region 108763	405 bp upstream
Tssr108764	transcription start site region 108764	651 bp downstream
Tssr108765	transcription start site region 108765	796 bp downstream