rs26895172 SNP Detail

Summary

• ID
  rs26895172
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8602289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGAAG CAAACAAATC
  TAAAGGCTCA TGGTCTCTCT CGACAATAAT CTCTGTTGTT GCCTTCACCC CAAAGTACGG
  ATCTGCCATT CACCCCCACC AATGCCAGGT GATCCACTGC CACAGATCCA CAGCTTCTCA
  CGAGGCTAGC CTTGAAACAG TGTGTGATGG AAACCCAAGC AGAAACTGGG AGCTGTGACC
  M
  CAAGACAGCA CTGCAGTCAT GTGGCTGCAC CAGGGTCAAG GTCGAGCCCA GCTGATCGGA
  ATAGCAACCC TAAAGAGGCT GCATCCTCTG AGAAAAAAAG ACAACTAAAA TCAAGCAAGG
  AGGGGACGAT GTGTCCTGGG ACTCACTACC TTCCACCAAA GCGGGTGAGC ATAGCCTGCC
  ATGCATGTGG GCGGAGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37102694	NES08402385	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26895172					SNP	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37102694	NES08402385	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8602289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442578	regulatory region 442578			172 bp proximal
Rr442579	regulatory region 442579			1240 bp proximal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr106844	transcription start site region 106844			895 bp downstream