rs26881965 SNP Detail

Summary

• ID
  rs26881965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8602828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGGTA GCCTCAACAA
  AACAAGTGTG TGGGGAGACC CCAGTTTCAC AAGCCGGCTC TTCTGGATGC CTGACGTCTT
  TGGAGAACAG AGCCTGTACT TAAATGTTAA ACAAGAAGTT ACACATTTAC TGGTACGTCT
  GTATGAAGAC TAGGGCTCAT TTTGATATGA AGACAAAGGA AATAATTCTT GCCATTTTAC
  W
  GTAAGGATCT CAGGGAAACT GCCCCCACAT GCTATCCAGA AAGAACAATT CTTTTGTGCT
  ACCAGCATAG TTAAGTACTG GCTTTGTATC TGCAGTTCAC AACAGGGAGC CTTACAGGCA
  TTCCTCGCAG GCATTTGCCA TCAACTTTCA CTGAGACGGG TAACTGGAAA CATGGCTTAT
  TTCCAAGAAA GTAACACCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37102687	NES08402392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26881965					SNP	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37102687	NES08402392	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8602828 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442578	regulatory region 442578			within coordinates
Rr442579	regulatory region 442579			701 bp proximal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr106844	transcription start site region 106844			356 bp downstream